PyGMQL
latest
Contents:
Installation
Introduction
The Genomic data model
Genometric Query Language
The GMQLDataset
Building expressions
GDataframe
Remote data management
Library settings
Spark and system configurations
Contents:
Tutorial 1
: Simple example of local processing
Tutorial 2:
Mixing local and remote processing
Tutorial 3
: GWAS on a cloud
Contents:
Parsers
PyGMQL
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
J
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
A
ANNParser (class in gmql.dataset.parsers.Parsers)
AVG (class in gmql.dataset.DataStructures.Aggregates)
B
BAG (class in gmql.dataset.DataStructures.Aggregates)
BasicParser (class in gmql.dataset.parsers.Parsers)
BedParser (class in gmql.dataset.parsers.Parsers)
BedScoreParser (class in gmql.dataset.parsers.Parsers)
C
Configuration (class in gmql.configuration)
COUNT (class in gmql.dataset.DataStructures.Aggregates)
cover() (GMQLDataset method)
D
DG (class in gmql.dataset.DataStructures.GenometricPredicates)
DGE (class in gmql.dataset.DataStructures.GenometricPredicates)
difference() (GMQLDataset method)
DL (class in gmql.dataset.DataStructures.GenometricPredicates)
DLE (class in gmql.dataset.DataStructures.GenometricPredicates)
DOWN (class in gmql.dataset.DataStructures.GenometricPredicates)
E
extend() (GMQLDataset method)
F
flat_cover() (GMQLDataset method)
G
GDataframe (class in gmql.dataset.GDataframe)
get_attributes() (RegionParser method)
get_configuration() (in module gmql.settings)
get_gmql_parser() (RegionParser method)
get_name_type_dict() (RegionParser method)
get_ordered_attributes() (RegionParser method)
get_ordered_types() (RegionParser method)
get_reg_attributes() (GMQLDataset method)
get_remote_manager() (in module gmql.managers)
get_types() (RegionParser method)
gmql.dataset.loaders.Loader (module)
GMQLDataset (class in gmql.dataset.GMQLDataset)
group() (GMQLDataset method)
H
head() (GMQLDataset method)
histogram_cover() (GMQLDataset method)
J
join() (GMQLDataset method)
L
load_from_file() (in module gmql.dataset.loaders.Loader)
load_from_path() (in module gmql.dataset.loaders.Loader)
load_from_remote() (in module gmql.dataset.loaders.Loader)
login() (in module gmql.managers)
logout() (in module gmql.managers)
M
map() (GMQLDataset method)
materialize() (GMQLDataset method)
MAX (class in gmql.dataset.DataStructures.Aggregates)
MD (class in gmql.dataset.DataStructures.GenometricPredicates)
MEDIAN (class in gmql.dataset.DataStructures.Aggregates)
merge() (GMQLDataset method)
meta_group() (GMQLDataset method)
meta_project() (GMQLDataset method)
meta_select() (GMQLDataset method)
MetaField() (GMQLDataset method)
MIN (class in gmql.dataset.DataStructures.Aggregates)
N
NarrowPeakParser (class in gmql.dataset.parsers.Parsers)
normal_cover() (GMQLDataset method)
O
order() (GMQLDataset method)
P
parse_regions() (RegionParser method)
parse_strand() (RegionParser static method)
project() (GMQLDataset method)
project_meta() (GDataframe method)
Q
Q1 (class in gmql.dataset.DataStructures.Aggregates)
Q2 (class in gmql.dataset.DataStructures.Aggregates)
Q3 (class in gmql.dataset.DataStructures.Aggregates)
R
reg_project() (GMQLDataset method)
reg_select() (GMQLDataset method)
RegField() (GMQLDataset method)
RegionParser (class in gmql.dataset.parsers.RegionParser)
regs_group() (GMQLDataset method)
RnaSeqParser (class in gmql.dataset.parsers.Parsers)
S
select() (GMQLDataset method)
set_app_name() (Configuration method)
set_local_java_options() (in module gmql.settings)
set_master() (Configuration method)
(in module gmql.settings)
set_mode() (in module gmql.settings)
set_progress() (in module gmql.settings)
set_remote_address() (in module gmql.settings)
set_spark_conf() (Configuration method)
set_spark_configs() (in module gmql.settings)
set_system_conf() (Configuration method)
SQRT() (in module gmql.dataset.DataStructures.ExpressionNodes)
STD (class in gmql.dataset.DataStructures.Aggregates)
SUM (class in gmql.dataset.DataStructures.Aggregates)
summit_cover() (GMQLDataset method)
T
to_dataset_files() (GDataframe method)
to_GMQLDataset() (GDataframe method)
to_matrix() (GDataframe method)
U
union() (GMQLDataset method)
UP (class in gmql.dataset.DataStructures.GenometricPredicates)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.